Accurate spliced alignment of long RNA sequencing reads | bioRxiv
Featherweight long read alignment using partitioned reference indexes | Scientific Reports
Minimap2: versatile pairwise alignment for nucleotide sequences | Semantic Scholar
Minimap2 workflow depicting its three key modules: (i) seeding, (ii)... | Download Scientific Diagram
Accelerating Minimap2 for accurate long-read alignment on GPUs
StringTie
Quickstart - how to polish a genome assembly — Nanopolish 0.8.4 documentation
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data - Goussarov - 2022 - MicrobiologyOpen - Wiley Online Library
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing | Nature Biotechnology
QIAGEN Bioinformatics Manuals
cotton genome variations database
Microorganisms | Free Full-Text | Nanopore Sequencing Is a Credible Alternative to Recover Complete Genomes of Geminiviruses
Issues with SARS-CoV-2 sequencing data - nCoV-2019 Genomic Epidemiology - Virological
A complete reference genome improves analysis of human genetic variation | Science
QIAGEN Bioinformatics Manuals
FLAMES
Racon polish with long reads, x4
GitHub - PacificBiosciences/pbmm2: A minimap2 frontend for PacBio native data formats
Frontiers | A Novel SARS-CoV-2 Viral Sequence Bioinformatic Pipeline Has Found Genetic Evidence That the Viral 3′ Untranslated Region (UTR) Is Evolving and Generating Increased Viral Diversity
The NCBI Eukaryotic Genome Annotation Pipeline
Abundance estimation after Minimap2 alignment · Issue #207 · gpertea/stringtie · GitHub
GitHub - UCLA-VAST/minimap2-acceleration: Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository
Long-Read Isoform Definition with FLAIR
